Magnesium citrate is magnesium bound to citric acid, magnesium malate bound to malic acid. Both are organic, well bioavailable forms. Citrate has a slightly laxative effect and is widely used, malate is regarded as particularly stomach-friendly. For the pure magnesium supply both are well suited; the choice depends above all on tolerance and personal preference.
Anyone standing in front of the magnesium shelf in the health food shop or drugstore quickly encounters a confusing variety: citrate, malate, oxide, bisglycinate, glycerophosphate. Two of the most popular organic forms are magnesium citrate and magnesium malate. Both provide well-available magnesium — but differ in detail. This comparison shows you where the differences lie and which form can be the better choice for which purpose.
Short answer: the difference at a glance
Both forms are organic magnesium compounds in which the magnesium is bound to an organic acid — to citric acid in the case of citrate, to malic acid in the case of malate. This binding ensures that the body can absorb the magnesium well. In their effect on magnesium balance they hardly differ. Practical differences exist above all in tolerance and in the "accompaniment" of the respective acid. Magnesium contributes to normal muscle function and Magnesium contributes to the reduction of tiredness and fatigue — regardless of the chosen form.
Magnesium citrate: the widespread all-rounder form
Magnesium citrate is probably the best-known organic magnesium form. It is very well absorbed and is widely used in capsules, powders and effervescent tablets. A characteristic feature: in higher doses citrate has a slightly laxative effect and draws water into the intestine. For people who tend towards constipation this can be a welcome side effect — those with a sensitive gastrointestinal tract, on the other hand, tend to find it disturbing at higher amounts. Citrate is well suited for the general magnesium supply and is usually attractively priced.
Magnesium malate: the stomach-friendly alternative
With magnesium malate the magnesium is bound to malic acid (malate). This form is regarded as particularly stomach-friendly and usually has a less laxative effect than citrate — an advantage for anyone with a sensitive digestion. Malic acid is also a natural building block of the cells' energy metabolism (citric acid cycle), which is why malate is readily chosen by physically active people and in the case of a general feeling of tiredness. However, there is no reliable evidence of an effect of malic acid going beyond the pure magnesium effect — the main benefit remains the well-available magnesium itself.
Bioavailability: is there a real winner?
Both forms are among the organic magnesium compounds and are absorbed considerably better than inorganic magnesium oxide. Between citrate and malate the differences in absorption are small and barely relevant in practice. More decisive than the last decimal place in bioavailability are the amount of magnesium contained per serving — the so-called elemental magnesium content — and personal tolerance. A look at the nutritional table is therefore worth more than a sheer fixation on the salt form.
Further magnesium forms at a glance
Citrate and malate are not the only options. Magnesium bisglycinate (magnesium bound to the amino acid glycine) is regarded as particularly gentle on the stomach and is readily chosen for the evening dose. Magnesium oxide is inorganic; it does contain a lot of elemental magnesium per gram, but as the sole source it is absorbed less well and has a stronger laxative effect. Magnesium glycerophosphate and magnesium taurate are further organic forms with good tolerance. In practice, many high-quality preparations deliberately rely on a mixture of several forms in order to combine absorption and tolerance. Our Magnesium Complex is built this way: two capsules contain 430 mg tri-magnesium dicitrate, 300 mg magnesium malate, 300 mg magnesium bisglycinate and 400 mg magnesium oxide, together 400 mg of elemental magnesium. So citrate and malate are both in there. The comparison of citrate and malate thus fits into a larger spectrum — both clearly belong to the recommendable, well-available variants.
How an increased magnesium requirement can show itself
The magnesium requirement can rise in certain phases of life — for example during intensive sport, in phases of stress, in pregnancy or with a one-sided diet. Heavy sweating and regular alcohol consumption also let magnesium losses climb. Magnesium contributes to normal energy-yielding metabolism and Magnesium contributes to normal psychological function, which is why an adequate supply makes sense especially in demanding phases. Whether citrate or malate: what matters is that you take in enough magnesium at all — through foods such as whole grains, nuts and green vegetables and, if needed, as a supplement.
Cover magnesium first through the diet
Before it comes to the choice of the right salt form, it is worth looking at the plate. Particularly rich in magnesium are pumpkin and sunflower seeds, almonds, cashews, whole-grain cereals, oat flakes, pulses, dark chocolate and green leafy vegetables. Some mineral waters also provide notable amounts — a look at the label reveals the content. Anyone who regularly includes these foods already covers a large part of the requirement through the normal diet. A supplement with citrate, malate or another form is then above all a sensible top-up in phases with an increased requirement or with a one-sided diet.
Taking magnesium correctly: timing and combination
For absorption the timing plays a smaller role than often assumed — regularity is more important. Anyone taking larger amounts is best advised to spread them over two to three portions across the day; this improves absorption and tolerance alike. With the Magnesium Complex it is only two capsules a day anyway, which you can split between breakfast and dinner. Magnesium can be combined with meals without any problem. Anyone taking it for the nervous system or muscle relaxation readily chooses the evening dose. One should not reach for very high amounts at once, since excess magnesium can have a laxative effect — the body simply excretes too much of it again via the intestine.
Direct comparison and recommendation: which form for whom?
For the pure magnesium supply both forms are equally suitable. Choose magnesium citrate if you are looking for a proven, inexpensive all-round form or tend towards sluggish digestion anyway and even welcome the slightly laxative effect. Reach for magnesium malate if you have a sensitive stomach, want to avoid the laxative effect or are physically very active. If you like it especially stomach-friendly, take our Magnesium Bisglycinate: the magnesium is bound to two glycine molecules (chelated), the capsules are vegan, and three of them deliver 360 mg of elemental magnesium with meals. As a guide, adults need, according to reference values, around 300 to 400 milligrams of magnesium per day across all sources. If pre-existing conditions such as impaired kidney function exist or you take medication, you should clarify the intake with a doctor beforehand.
Take note of interactions and limits
Magnesium can influence the absorption of certain medications — for example some antibiotics or thyroid preparations — which is why a time gap of a few hours makes sense here. In the case of severely impaired kidney function the body can excrete excess magnesium less well; in this case particular restraint is advised. For healthy adults, on the other hand, a supplementary intake within the usual range is regarded as well tolerated. So stick to the intake recommendation on the packaging instead of raising the dose on your own.
Magnesium and physical activity
Anyone who regularly trains intensively also loses minerals through sweat — magnesium is one of them. Magnesium contributes to normal muscle function, and that is exactly why many athletes consciously ensure an adequate intake. This does not mean that active people automatically need a preparation; what matters is the overall balance of diet and any supplement. Malate is popular among athletes because it is stomach-friendly and easy to fit into the daily routine — an advantage when several small portions across the day are preferred. If you lose more than magnesium when you sweat, the Electrolyte Complex gives you five minerals in one tablet: magnesium, potassium, calcium, sodium and chloride, one tablet three times a day with meals.
Matching Products from Scheunengut
Which form suits you is decided by your digestion. If you want a broad range, take the Magnesium Complex: two capsules a day deliver 400 mg of elemental magnesium, which is 107 % of the nutrient reference value. It contains tri-magnesium dicitrate, magnesium malate, magnesium bisglycinate and magnesium oxide, the oxide of natural origin from the Dead Sea. High-dose, to be taken at any time of day, with a plant-based capsule shell. Magnesium contributes to normal muscle function, to normal functioning of the nervous system, to normal energy-yielding metabolism and to the reduction of tiredness and fatigue.
If your stomach is sensitive, Magnesium Bisglycinate is the calm choice. Each magnesium ion sits on two molecules of the amino acid glycine, chelated, vegan and especially stomach-friendly. Three capsules deliver 360 mg of elemental magnesium (96 % of the nutrient reference value), to be taken with meals. Magnesium contributes to the maintenance of normal bones, to normal psychological function and to normal protein synthesis.
For long training days and hot summer days there is the Electrolyte Complex with magnesium, potassium, calcium, sodium and chloride, the magnesium partly as bisglycinate. Three tablets a day, no added sugar, and the pack of 360 tablets lasts 120 days. Potassium contributes to normal muscle function and to normal functioning of the nervous system, calcium likewise to normal muscle function.
Scheunengut has existed since 2012, without investors and with a focus on pure raw-material quality. All three products are made in Germany, and we have every finished batch tested independently in a laboratory before anything reaches you.
Frequently asked questions (FAQ)
Is magnesium citrate or magnesium malate better?
For the pure magnesium supply both are equally well suited, since both are organic, well-absorbable forms. Citrate has a slightly laxative effect and is inexpensive; malate is regarded as particularly stomach-friendly. "Better" therefore depends above all on your goal and your tolerance.
Which magnesium form is the most stomach-friendly?
Magnesium malate and magnesium bisglycinate are regarded as particularly stomach-friendly and usually have a less laxative effect than citrate. Anyone with a sensitive gastrointestinal tract often copes better with them. Splitting the dose over the day also improves tolerance considerably.
Why does magnesium citrate have a laxative effect?
In higher doses citrate draws water into the intestine and thus stimulates digestion. For people with sluggish digestion this can be pleasant; with a sensitive intestine or high amounts it can lead to soft stools. Smaller portions spread over the day soften the effect.
How much magnesium should I take daily?
According to reference values, adults need about 300 to 400 milligrams of magnesium per day across all sources — foods included. What matters is the elemental magnesium content per serving, not the total weight of the compound. A look at the nutritional table helps with the comparison.
Can I combine magnesium citrate and magnesium malate?
Yes, many preparations combine several magnesium forms in order to bundle their advantages. Our Magnesium Complex contains dicitrate and malate together with bisglycinate and oxide. What matters is that the total daily amount stays within the recommended range. In the case of kidney diseases or regular medication use, additional caution is advised and a time gap from medication makes sense.
Health notice: This guide is for general information purposes only and does not replace individual medical or pharmaceutical advice. Food supplements are not a substitute for a balanced, varied diet and a healthy lifestyle. If you have health concerns, are pregnant or breastfeeding, or are taking medication, please consult a doctor or pharmacist. How our guides are created →
Sources
- Selected Questions and Answers on Magnesium — German Nutrition Society (DGE), 2025
- Regulation (EU) No 432/2012 — List of permitted health claims made on foods — EUR-Lex / Europäische Union, 2012
- Magnesium — Fact Sheet for Health Professionals — National Institutes of Health (NIH), Office of Dietary Supplements, 2022
- Magnesium – What Should You Consider? — Verbraucherzentrale, 2026








